I'm not clear on what you're trying to accomplish, but hopefully this will help ~ When you use Payroll Manual Checks, you need to enter every dollar amount, including any taxes. They do not get calculated automatically. If you do need to make some sort of adjustment to federal or state withholdings, you can key in specific dollar amounts using the Payroll Manual Check Transaction Entry window. However, if you need to pay an employee for something, and you want to the taxes to be calculated, the best way would be to cut a separate "regular" payroll check. One alternate method of potentially adjusting federal or state withholdings, while still using a "regular" payroll check, would be to temporarily manipulate the employees Additional Withholding amount and/or the taxability checkboxes on the pay code itself. If you choose to do that, just be sure to reset the amounts and/or checkboxes prior to the next standard check run.
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